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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_13156971_13176216_F

Intron Information:

Intron Rank:
148769
Intron Class:
major
Intron Phase:
Intron Coordinates:
13156971 - 13176216
Intron Length:
19246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ATTTCTTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79.3
31.1
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
87.4
0.84
0.7
85.5
27.4
Minor 5ss
28.1
-2.5
2.7
31.6
42.6
Minor BPS
58.3
0.34
1.8
78.39
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030085
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026488
13149937 - 13179276
29340