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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_13176358_13178532_F

Intron Information:

Intron Rank:
148770
Intron Class:
major
Intron Phase:
Intron Coordinates:
13176358 - 13178532
Intron Length:
2175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGAAGA
5'SS Class:
major
3'SS Sequence:
GGTATTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTAAT
U12 Branch Point Sequence:
TGTGGGTTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
65.8
40
Major BPS
66.6
0.41
1.4
69.7
44.2
Major PPT
69.2
0.43
0.9
61.6
40
Minor 5ss
35
-1.7
3
46.2
42.8
Minor BPS
44.8
-0.5
2.5
55.32
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030085
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026488
13149937 - 13179276
29340