Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1323324_1326579_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1323324 - 1326579

Intron Length:

3256

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTACAT

5'SS Class:

major

3'SS Sequence:

CTCTGAAGTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGTTCAA

U12 Branch Point Sequence:

TTGCTCTGAAGT

Flanking Amino Acid:

DVEIDKNLVNSNLSGYMKYS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.1

64.6

41.2

Major BPS

66.8

0.42

1.1

69.4

37.7

Major PPT

65.4

0.35

1.1

58.6

40.9

Minor 5ss

32.6

-2

3.4

48.1

47.4

Minor BPS

54.8

0.23

1.8

73.85

42.9

Associated Gene:

Gene:

MRVI1

Ensembl Gene ID:

ENSAPLG00000004936

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005114

1323244 - 1350062

26819