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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_13267615_13351546_F

Intron Information:

Intron Rank:
142304
Intron Class:
major
Intron Phase:
Intron Coordinates:
13267615 - 13351546
Intron Length:
83932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTATG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.7
34.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92
0.94
0.7
87.7
29.5
Minor 5ss
39.4
-1.2
2.8
51.2
45.3
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026627
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047974
13267357 - 13396709
129353