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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1327906_1330316_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1327906 - 1330316
Intron Length:
2411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTTATTAAA
5'SS Class:
major
3'SS Sequence:
AGCAGCGGAAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATCCAT
U12 Branch Point Sequence:
AAATCCATCATC
Flanking Amino Acid:
GKMIYAGPNLKEIHSCFSVL
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.2
71
34.1
Major BPS
60.7
0.27
1.2
70.5
35.7
Major PPT
38.8
-0.6
1.6
27.6
35.7
Minor 5ss
33.2
-1.9
2.5
35.6
34.1
Minor BPS
48.2
-0.1
2
60.08
38.7

Associated Gene:

Gene:
MRVI1
Ensembl Gene ID:
ENSAPLG00000004936
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005114
1323244 - 1350062
26819