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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_13351618_13396405_F

Intron Information:

Intron Rank:
142305
Intron Class:
major
Intron Phase:
Intron Coordinates:
13351618 - 13396405
Intron Length:
44788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTCTCATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TATTTCTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
71.6
33.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.8
0.76
0.7
82.4
27.8
Minor 5ss
32.8
-2
2.7
42.3
38.4
Minor BPS
57.3
0.31
1.8
77.01
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026627
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047974
13267357 - 13396709
129353