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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1337180_1338451_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1337180 - 1338451
Intron Length:
1272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TAAATCCAAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTCTTTAAAT
Flanking Amino Acid:
SPPLTEKEVENVFVQLSLAF
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
54.3
0.1
1
49
39
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
85.3
1.19
1.1
97.3
26.5

Associated Gene:

Gene:
MRVI1
Ensembl Gene ID:
ENSAPLG00000004936
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005114
1323244 - 1350062
26819