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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1338593_1341643_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1338593 - 1341643
Intron Length:
3051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGTAT
U12 Branch Point Sequence:
GCTTATGTATTT
Flanking Amino Acid:
ELENFKAAITSSAHLWHHYE
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.3
32.8
Major BPS
63.7
0.34
1.4
63.7
43.9
Major PPT
84.3
0.77
0.9
81.6
35.5
Minor 5ss
33.3
-1.9
2.9
41.3
44.8
Minor BPS
42.7
-0.4
2.2
60.8
43.6

Associated Gene:

Gene:
MRVI1
Ensembl Gene ID:
ENSAPLG00000004936
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005114
1323244 - 1350062
26819