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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_13396473_13476698_F

Intron Information:

Intron Rank:
142303
Intron Class:
major
Intron Phase:
Intron Coordinates:
13396473 - 13476698
Intron Length:
80226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACATGGT
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGCTTCTGAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
69.7
41.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
93.1
0.97
0.5
93.2
15.7
Minor 5ss
32.7
-2
3.5
49.7
46.5
Minor BPS
53.7
0.11
1.8
64.34
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026627
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043620
13396285 - 13477439
81155