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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1342697_1345188_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1342697 - 1345188
Intron Length:
2492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTTTGTCTT
5'SS Class:
major
3'SS Sequence:
TTCTTTGTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AAATAAATAATG
Flanking Amino Acid:
GSSGKNNNNKNMPRRRVSVA
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.2
69.3
41
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
78.6
0.64
0.8
72.7
37.5
Minor 5ss
44.3
-0.6
2.8
60.6
37.7
Minor BPS
43.3
-0.6
1.9
47.81
38.5

Associated Gene:

Gene:
MRVI1
Ensembl Gene ID:
ENSAPLG00000004936
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005114
1323244 - 1350062
26819