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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1345297_1345784_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1345297 - 1345784
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTCAACTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCATTTTCAACT
Flanking Amino Acid:
ASPIPSTPSLSESPSNGRSN
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.3
75.9
35.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
80.9
0.69
0.9
73.6
35.7
Minor 5ss
36.6
-1.5
2.7
42.9
38.5
Minor BPS
63.4
0.5
1.5
76.31
40.6

Associated Gene:

Gene:
MRVI1
Ensembl Gene ID:
ENSAPLG00000004936
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005114
1323244 - 1350062
26819