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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1345853_1347542_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1345853 - 1347542
Intron Length:
1690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTCTTTTGTCT
Flanking Amino Acid:
STPVLPALLENGKTNGEPDC
Intron Amino Acid Position:
631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
79.9
0.67
1
77.1
37.1
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
45.6
-0.2
3.4
79.65
36.7

Associated Gene:

Gene:
MRVI1
Ensembl Gene ID:
ENSAPLG00000004936
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005114
1323244 - 1350062
26819