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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_13467025_13475229_F

Intron Information:

Intron Rank:
142290
Intron Class:
major
Intron Phase:
Intron Coordinates:
13467025 - 13475229
Intron Length:
8205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTAATTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
ATTTCTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
76.5
33.7
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
66.7
0.38
1.1
69.2
39.9
Minor 5ss
28.6
-2.5
3.2
36.4
42
Minor BPS
66.3
0.59
2
85.82
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026627
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043388
13464127 - 13476885
12759
ENSAPLT00000021557
13462591 - 13476885
14295
ENSAPLT00000018350
13465226 - 13476885
11660
ENSAPLT00000017370
13466690 - 13476885
10196