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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_13467025_13476698_F

Intron Information:

Intron Rank:
142298
Intron Class:
major
Intron Phase:
Intron Coordinates:
13467025 - 13476698
Intron Length:
9674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGCTTCTGAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
76.5
33.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
93.1
0.97
0.5
93.2
15.7
Minor 5ss
28.6
-2.5
3.2
36.4
42
Minor BPS
53.7
0.11
1.8
64.34
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026627
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026088
13467011 - 13477439
10429