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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1348762_1349821_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1348762 - 1349821
Intron Length:
1060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
TACTATATAACT
Flanking Amino Acid:
NDDEIKKLKSSRLEVVINYL
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
71.2
34.5
Major BPS
69.1
0.48
1
70
32.1
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
26.8
-2.7
2.9
32.6
42.4
Minor BPS
56.1
0.27
1.8
75.13
41.3

Associated Gene:

Gene:
MRVI1
Ensembl Gene ID:
ENSAPLG00000004936
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005114
1323244 - 1350062
26819