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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_13543841_13688179_F

Intron Information:

Intron Rank:
147072
Intron Class:
major
Intron Phase:
Intron Coordinates:
13543841 - 13688179
Intron Length:
144339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTATA
5'SS Class:
major
3'SS Sequence:
TTTGTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AAACATTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
80.9
32.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
88.8
0.87
0.7
81
36.6
Minor 5ss
41.8
-0.9
2.5
51.7
44.8
Minor BPS
56.7
0.19
1.5
61.9
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029202
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044813
13543556 - 13689417
145862