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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_13608315_13609346_F

Intron Information:

Intron Rank:
130826
Intron Class:
major
Intron Phase:
Intron Coordinates:
13608315 - 13609346
Intron Length:
1032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TTTCCATTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
80.4
33.8
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
82
0.72
0.8
76.4
31
Minor 5ss
40
-1.1
3.2
56.4
48
Minor BPS
60.1
0.31
2
78.35
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020229
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047518
13608067 - 13610551
2485