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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1361467_1361571_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1361467 - 1361571
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATGAT
5'SS Class:
major
3'SS Sequence:
ATTTTTATTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTGATATTAAAA
Flanking Amino Acid:
KALKHRFETCSYGWVKDGLV
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
76.4
32.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.1
0.75
0.8
78.9
33.6
Minor 5ss
39.8
-1.1
3.3
57.3
47.4
Minor BPS
48.5
-0.1
1.7
58.08
41.2

Associated Gene:

Gene:
LYVE1
Ensembl Gene ID:
ENSAPLG00000004756
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004896
1355663 - 1365782
10120