Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1361712_1363584_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1361712 - 1363584

Intron Length:

1873

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTAAG

5'SS Class:

strong_major

3'SS Sequence:

TTCCCTACTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTTAC

U12 Branch Point Sequence:

CTTTCCCTACTG

Flanking Amino Acid:

TFMVYCFNSSDVQINSCVPD

Intron Amino Acid Position:

127

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

79.7

35.4

Major BPS

61.7

0.29

1.1

40.4

Major PPT

79.5

0.66

0.8

73.9

29.5

Minor 5ss

41.2

-1

2.5

50.1

46.4

Minor BPS

51.7

-0

2.1

63.6

44.7

Associated Gene:

Gene:

LYVE1

Ensembl Gene ID:

ENSAPLG00000004756

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004896

1355663 - 1365782

10120