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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_13674072_13688179_F

Intron Information:

Intron Rank:
147067
Intron Class:
major
Intron Phase:
Intron Coordinates:
13674072 - 13688179
Intron Length:
14108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AAACATTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
88.8
0.87
0.7
81
36.6
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
56.7
0.19
1.5
61.9
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029202
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037857
13673948 - 13764750
90803