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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1373813_1375546_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1373813 - 1375546
Intron Length:
1734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGCCTT
5'SS Class:
major
3'SS Sequence:
TTCTTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTTTCTTTATTT
Flanking Amino Acid:
FLGRVAELNDVIAKLASGQD
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
65.7
45.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
90.2
0.9
0.7
89.1
26.1
Minor 5ss
45.8
-0.4
3.2
66.5
44.4
Minor BPS
70.4
0.72
1.5
84.38
36.8

Associated Gene:

Gene:
RNF141
Ensembl Gene ID:
ENSAPLG00000004710
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004843
1373631 - 1382641
9011