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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_13764730_13877376_F

Intron Information:

Intron Rank:
147069
Intron Class:
major
Intron Phase:
Intron Coordinates:
13764730 - 13877376
Intron Length:
112647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTGA
5'SS Class:
major
3'SS Sequence:
TTGTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTAAATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.3
39.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.2
0.88
0.7
84.7
30.1
Minor 5ss
42.6
-0.8
3
56.2
47.9
Minor BPS
62
0.46
1.8
83.39
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029202
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042791
13764685 - 13916361
151677