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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1376883_1379876_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1376883 - 1379876
Intron Length:
2994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTCA
5'SS Class:
major
3'SS Sequence:
TTCTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCATCTGGGAGA
Flanking Amino Acid:
SSCQASLWMGRVKQLTDEDE
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.2
33.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
88.7
0.87
0.6
84.5
23.3
Minor 5ss
46.6
-0.3
2.4
59.8
44.6
Minor BPS
40.5
-0.7
2.2
50.88
41.1

Associated Gene:

Gene:
RNF141
Ensembl Gene ID:
ENSAPLG00000004710
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004843
1373631 - 1382641
9011