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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1379985_1382490_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1379985 - 1382490
Intron Length:
2506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATAGAT
5'SS Class:
major
3'SS Sequence:
GGATTTCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTCTCTGGATT
Flanking Amino Acid:
HSFCQKCIDKWSDRHRSCPV
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
69.7
34.4
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
68.2
0.41
1
62.5
43
Minor 5ss
32.3
-2
3.5
44.2
44.6
Minor BPS
62.5
0.47
1.4
80.89
34.5

Associated Gene:

Gene:
RNF141
Ensembl Gene ID:
ENSAPLG00000004710
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004843
1373631 - 1382641
9011