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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_13877460_13878550_F

Intron Information:

Intron Rank:
147070
Intron Class:
major
Intron Phase:
Intron Coordinates:
13877460 - 13878550
Intron Length:
1091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCCATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATAAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82.3
32.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
85.1
0.79
0.8
79.3
32.3
Minor 5ss
43.4
-0.7
3.1
60.6
44.5
Minor BPS
52.2
0.15
2.2
77.89
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029202
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047698
13877334 - 13882276
4943
ENSAPLT00000042791
13764685 - 13916361
151677