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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1394618_1396082_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1394618 - 1396082
Intron Length:
1465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGCTT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAA
U12 Branch Point Sequence:
TCAATGTTGACT
Flanking Amino Acid:
NISHGLLLKKSPVLQYLYYL
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
68
42.6
Major BPS
65.6
0.39
0.9
67.3
29.6
Major PPT
88.3
0.86
0.7
84.9
29.9
Minor 5ss
42.8
-0.8
3.4
65
46.3
Minor BPS
48.7
-0
2.1
67.79
43.3

Associated Gene:

Gene:
AMPD3
Ensembl Gene ID:
ENSAPLG00000004559
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004696
1394390 - 1418262
23873