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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1399204_1400793_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1399204 - 1400793
Intron Length:
1590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAA
U12 Branch Point Sequence:
ATAGTCACAACT
Flanking Amino Acid:
MRWIIQVPRIYDIFRTKNIL
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
82.5
29.6
Major BPS
64.8
0.37
1.2
67.9
36.3
Major PPT
88.3
0.86
0.6
86
21
Minor 5ss
39.3
-1.2
2.9
53
39
Minor BPS
48
-0
1.9
68.35
42.1

Associated Gene:

Gene:
AMPD3
Ensembl Gene ID:
ENSAPLG00000004559
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004696
1394390 - 1418262
23873