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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1400958_1401835_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1400958 - 1401835
Intron Length:
878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAT
5'SS Class:
strong_major
3'SS Sequence:
TATTGTTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTGTTCAATA
Flanking Amino Acid:
GGEYFARMVKEVARELEESK
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
89.4
23.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70.9
0.47
0.9
66.9
39
Minor 5ss
36.8
-1.5
2.9
50.6
45.9
Minor BPS
53.7
0.11
1.9
68.45
38.4

Associated Gene:

Gene:
AMPD3
Ensembl Gene ID:
ENSAPLG00000004559
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004696
1394390 - 1418262
23873