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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1401968_1402211_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1401968 - 1402211
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
TTTCCTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTCCTTCTATA
Flanking Amino Acid:
LTVDSLDVHAGRQTFHRFDK
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
72
39.5
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
84.9
0.79
0.6
80.7
24.7
Minor 5ss
37.3
-1.4
2.8
48.1
41.6
Minor BPS
51
0.02
1.8
68.86
37.3

Associated Gene:

Gene:
AMPD3
Ensembl Gene ID:
ENSAPLG00000004559
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004696
1394390 - 1418262
23873