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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_14047063_14047128_F

Intron Information:

Intron Rank:
144102
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
14047063 - 14047128
Intron Length:
66

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CACATTTAAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTATAGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
58.8
0.2
1
54.7
39
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
48.7
-0
2
76.58
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027670
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043632
14019335 - 14049455
30121