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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_14048128_14049233_F

Intron Information:

Intron Rank:
144104
Intron Class:
major
Intron Phase:
Intron Coordinates:
14048128 - 14049233
Intron Length:
1106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCCTCTTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
84
0.77
0.7
81.8
29.4
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
60
0.29
1.6
65.17
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027670
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043632
14019335 - 14049455
30121