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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_14059136_14059913_F

Intron Information:

Intron Rank:
127335
Intron Class:
major
Intron Phase:
Intron Coordinates:
14059136 - 14059913
Intron Length:
778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATCAA
5'SS Class:
major
3'SS Sequence:
TTCCTCCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTATTATTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
69.2
37
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
81.3
0.7
0.7
75.9
26.3
Minor 5ss
39
-1.2
2.9
49.3
46.9
Minor BPS
55.3
0.16
2
73.02
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018664
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041392
14052552 - 14062976
10425