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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1414891_1415366_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1414891 - 1415366
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTCAGTATTT
Flanking Amino Acid:
VSISGDYCAGVTVDDYEQAA
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.6
40.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90.7
0.92
0.6
88.8
20.5
Minor 5ss
33.2
-1.9
3.2
40.2
45.4
Minor BPS
46.5
-0.1
2.4
72.68
44.6

Associated Gene:

Gene:
AMPD3
Ensembl Gene ID:
ENSAPLG00000004559
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004696
1394390 - 1418262
23873