Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_14256721_14257622_F

Intron Information:

Intron Rank:

131348

Intron Class:

major

Intron Phase:

Intron Coordinates:

14256721 - 14257622

Intron Length:

902

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTGAT

U12 Branch Point Sequence:

TTGTTATTGATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

86.1

24.7

Major BPS

88.6

0.96

0.8

77.7

37.1

Major PPT

95.1

1.02

0.5

90.9

21.1

Minor 5ss

44.3

-0.6

2.9

62.8

Minor BPS

62.2

0.47

1.6

79.31

37.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020559

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040324

14256623 - 14259312

2690