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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_14290361_14295789_F

Intron Information:

Intron Rank:
134071
Intron Class:
major
Intron Phase:
Intron Coordinates:
14290361 - 14295789
Intron Length:
5429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGATTC
5'SS Class:
major
3'SS Sequence:
TTTGCTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCTAT
U12 Branch Point Sequence:
TTTGCTATTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
70
35.4
Major BPS
58.7
0.22
1.5
58.5
47.9
Major PPT
83.4
0.75
0.8
77.2
35.8
Minor 5ss
44.7
-0.6
3.1
65.4
39.7
Minor BPS
51.7
0.05
2
72.06
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022066
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019729
14290274 - 14301231
10958