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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_14316607_14444356_R

Intron Information:

Intron Rank:
132708
Intron Class:
major
Intron Phase:
Intron Coordinates:
14316607 - 14444356
Intron Length:
127750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TACTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTACTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
83.8
0.76
0.8
81.6
34.3
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
67.5
0.63
1.6
84.37
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018635
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031014
14266867 - 14445410
178544