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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_14450105_14451437_F

Intron Information:

Intron Rank:
129593
Intron Class:
major
Intron Phase:
Intron Coordinates:
14450105 - 14451437
Intron Length:
1333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTTTTTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
89.3
0.88
0.7
84.5
30
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
51.2
0.11
1.7
72.11
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019732
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045184
14449111 - 14452741
3631