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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_14450105_14459787_F

Intron Information:

Intron Rank:
129591
Intron Class:
major
Intron Phase:
Intron Coordinates:
14450105 - 14459787
Intron Length:
9683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TGTACTTTTATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
100
1.12
0.4
100
0
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
58
0.24
1.6
68.5
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019732
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044714
14449111 - 14461099
11989