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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_145019_146643_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145019 - 146643
Intron Length:
1625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGCTGTTTTATG
Flanking Amino Acid:
PDTSSPGNKKILNGGTPDIS
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.1
0.79
0.8
83.9
31.1
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
45.6
-0.4
2.1
51.17
43.8

Associated Gene:

Gene:
ARNTL
Ensembl Gene ID:
ENSAPLG00000003885
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004089
143668 - 169868
26201