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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_14524465_14569260_F

Intron Information:

Intron Rank:
133510
Intron Class:
major
Intron Phase:
Intron Coordinates:
14524465 - 14569260
Intron Length:
44796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
TTTCTTTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
ACTTCATTAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
88.3
0.86
0.8
88.2
29.1
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
55.7
0.04
2
62.83
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021810
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032166
14524379 - 14635599
111221