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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1456789_1457040_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1456789 - 1457040
Intron Length:
252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GCGCTCCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
TGCACTAACAGG
Flanking Amino Acid:
RVDVATEFKRKWTKWALSRA
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
73.7
0.53
0.9
69.3
36.9
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
31.9
-1.5
2.1
32.8
40.8

Associated Gene:

Gene:
ADM
Ensembl Gene ID:
ENSAPLG00000023045
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037651
1455968 - 1457294
1327