Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_14569367_14635545_F

Intron Information:

Intron Rank:

133506

Intron Class:

major

Intron Phase:

Intron Coordinates:

14569367 - 14635545

Intron Length:

66179

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTATGGCTT

5'SS Class:

major

3'SS Sequence:

TTTTGGTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTTAC

U12 Branch Point Sequence:

TACTCTGTAGTA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.59

67.8

42.7

Major BPS

66.4

0.41

1.1

57.4

41.4

Major PPT

86.3

0.82

0.8

80.6

Minor 5ss

42.9

-0.8

3.4

61.4

44.5

Minor BPS

46.8

-0.2

2.1

59.71

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021810

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022469

14569261 - 14746153

176893

ENSAPLT00000032166

14524379 - 14635599

111221