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Intron Name: Anas_platyrhynchos_platyrhynchos_5_146738_147559_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

146738 - 147559

Intron Length:

822

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

ACCCATACAATAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GATTCAT

U12 Branch Point Sequence:

TTACCCATACAA

Flanking Amino Acid:

MIAEEIMEIHRIRGSSPSSC

Intron Amino Acid Position:

515

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.8

76.5

26.8

Major BPS

74.4

0.61

1.2

77.7

37.1

Major PPT

54.2

0.1

0.9

48.1

33.1

Minor 5ss

24.3

-3

3.1

28.7

43.6

Minor BPS

47.9

-0.1

64.53

40.9

Associated Gene:

Gene:

ARNTL

Ensembl Gene ID:

ENSAPLG00000003885

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004089

143668 - 169868

26201