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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_14699827_14745629_F

Intron Information:

Intron Rank:
133508
Intron Class:
major
Intron Phase:
Intron Coordinates:
14699827 - 14745629
Intron Length:
45803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATTTATTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
86.7
0.82
0.8
80.6
36.1
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
60.4
0.32
1.8
74.55
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021810
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022469
14569261 - 14746153
176893