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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_14699827_14798438_F

Intron Information:

Intron Rank:
133505
Intron Class:
major
Intron Phase:
Intron Coordinates:
14699827 - 14798438
Intron Length:
98612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TAACCCTGCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
82.3
0.73
0.9
76.8
36.7
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
52.5
0.16
2
73.12
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021810
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019382
14569187 - 14798496
229310