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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_14751884_14756024_R

Intron Information:

Intron Rank:
153822
Intron Class:
major
Intron Phase:
Intron Coordinates:
14751884 - 14756024
Intron Length:
4141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATCAT
U12 Branch Point Sequence:
TAGTCTATCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
78.2
36.3
Major BPS
75.9
0.64
1.1
77.7
35.2
Major PPT
92.4
0.95
0.6
88.1
21.7
Minor 5ss
37.8
-1.4
2.7
44.3
36.8
Minor BPS
47.5
-0.2
2
60.92
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030250
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024996
14750561 - 14758640
8080