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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_14806386_14806489_F

Intron Information:

Intron Rank:
126431
Intron Class:
major
Intron Phase:
Intron Coordinates:
14806386 - 14806489
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGAATCTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
67.1
0.53
1.3
69.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018147
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019726
14806158 - 14807374
1217