Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15004851_15012824_F

Intron Information:

Intron Rank:

128528

Intron Class:

major

Intron Phase:

Intron Coordinates:

15004851 - 15012824

Intron Length:

7974

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGTGTTC

5'SS Class:

major

3'SS Sequence:

TTGCTGTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCACAA

U12 Branch Point Sequence:

AATGCCATGACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.1

66.7

39.8

Major BPS

53.3

0.08

1.1

37.5

Major PPT

82.1

0.72

0.9

76.5

37.5

Minor 5ss

-1.1

3.6

58.4

46.5

Minor BPS

58.5

0.35

1.8

75.63

40.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019234

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047295

14997159 - 15013275

16117

ENSAPLT00000033351

14964913 - 15013275

48363