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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15080152_15086185_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15080152 - 15086185
Intron Length:
6034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTGTTCATT
Flanking Amino Acid:
PQPLDSKTQELLGDDVQPFL
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.5
40.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.4
0.75
0.9
77.5
35.6
Minor 5ss
33.8
-1.8
3.3
49
46.8
Minor BPS
53.5
0.19
2.4
82.74
39.5

Associated Gene:

Gene:
C11orf74
Ensembl Gene ID:
ENSAPLG00000013519
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014074
15079987 - 15117596
37610