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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15093856_15095366_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15093856 - 15095366
Intron Length:
1511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTATCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
ATATTTCTACGT
Flanking Amino Acid:
LPPQTPNENETVMNENWKAG
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
80.6
33.5
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
80.1
0.68
0.9
73.4
36.2
Minor 5ss
34
-1.8
3.2
48.4
47.4
Minor BPS
43.7
-0.3
2.1
62.92
41.6

Associated Gene:

Gene:
C11orf74
Ensembl Gene ID:
ENSAPLG00000013519
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014074
15079987 - 15117596
37610